PyCogent

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of

Platypus Conquistador

Platypus Conquistador is a bioinformatics command line tool for the confirmation of the presence/absence of a specific taxon (or set of taxa) in environmental shotgun sequence reads. Platypus uses two

TopiaryExplorer

TopiaryExplorer supports visualization of very large trees while providing convenient interfaces for decorating the tree with taxonomic information, automatically coloring branches based on data about environments where they are observed,

BayesFold

BayesFold is a web application that finds, ranks, and draws the likeliest structures for a sequence alignment. Foldings are based on the predictions of the Bayesian statistical method. BayesFold provides

PrimerProspector

Primer Prospector is a pipeline of programs to design and analyze PCR primers. De novo primers can be generated from a set of aligned fasta sequences and these primers, or

Pyqi

Pyqi provides a suite of tools for developing and testing command line interfaces in Python. BioCore is the main repository for all of the software packages developed and maintained by the