BayesFold is a web application that finds, ranks, and draws the likeliest structures for a sequence alignment. Foldings are based on the predictions of the Bayesian statistical method. BayesFold provides convenient structure comparison and formatting functionality, and produces publication-quality graphics.
Knight, R, Birmingham A, Yarus M. (2004). RNA. 10(9): 1323-1336. doi:10.1261/rna.5168504RNA10(9):